A B C D E F G H I K L M N O P R S T U V W X Y Z

A

abort() - Method in interface org.micromanager.ndviewer.api.NDViewerAcqInterface

abortAcquisition() - Method in class org.micromanager.ndviewer.main.NDViewer

add(Roi) - Method in class org.micromanager.ndviewer.overlay.Overlay

Adds an ROI to this Overlay.

add(Roi, String) - Method in class org.micromanager.ndviewer.overlay.Overlay

Adds an ROI to this Overlay using the specified name.

addChannel(String, int) - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

addContrastControls(String) - Method in class org.micromanager.ndviewer.internal.gui.contrast.ContrastPanel

addContrastControls(String, boolean) - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

addControlPanel(ControlsPanelInterface) - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Add a custom JPanel containing controls to the JTabbedPane on the right side of the image.

addControlPanel(ControlsPanelInterface) - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

addControlPanel(ControlsPanelInterface) - Method in class org.micromanager.ndviewer.main.NDViewer

addCursorListener(HistogramPanel.CursorListener) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

addElement(Roi) - Method in class org.micromanager.ndviewer.overlay.Overlay

Adds an ROI to this Overlay.

addRow(Vector<String>) - Method in class org.micromanager.ndviewer.internal.gui.MetadataTableModel

addSetImageHook(Consumer<HashMap<String, Object>>) - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Add a hook function that runs whenever setImage gets called, either programatically or by someone moving the scrollbars

addSetImageHook(Consumer<HashMap<String, Object>>) - Method in class org.micromanager.ndviewer.main.NDViewer

ANGLE - Static variable in class org.micromanager.ndviewer.overlay.Roi

asp_bk - Variable in class org.micromanager.ndviewer.overlay.Roi

aspect - Variable in class org.micromanager.ndviewer.overlay.Roi

autostretch - Variable in class org.micromanager.ndviewer.internal.gui.contrast.HistogramControlsState

AxisScroller - Class in org.micromanager.ndviewer.internal.gui

This class provides a scrollbar and associated buttons for navigating different "axes" of a data set (for example: Z slice, timepoint, channel).

AxisScroller(ScrollerPanel, String, int, boolean) - Constructor for class org.micromanager.ndviewer.internal.gui.AxisScroller

B

BaseOverlayer - Class in org.micromanager.ndviewer.internal.gui

Class that encapsulates calculation of overlays for DisplayPlus

BaseOverlayer(NDViewer) - Constructor for class org.micromanager.ndviewer.internal.gui.BaseOverlayer

Bounds() - Constructor for class org.micromanager.ndviewer.internal.gui.contrast.GraphData.Bounds

bounds_ - Variable in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

C

CanvasMouseListener - Class in org.micromanager.ndviewer.internal.gui

CanvasMouseListener(NDViewer) - Constructor for class org.micromanager.ndviewer.internal.gui.CanvasMouseListener

CanvasMouseListenerInterface - Interface in org.micromanager.ndviewer.api

Interface for all three types of mouse listeners in one.

cascade(Window, Class<?>) - Static method in class org.micromanager.ndviewer.internal.gui.WindowPositioning

Set the location of a window so that it cascades within a series of windows.

center - Variable in class org.micromanager.ndviewer.overlay.Roi

CENTER - Static variable in class org.micromanager.ndviewer.overlay.TextRoi

channelSetActive(String, boolean) - Method in class org.micromanager.ndviewer.main.NDViewer

clear() - Method in class org.micromanager.ndviewer.internal.gui.MetadataTableModel

clear() - Method in class org.micromanager.ndviewer.overlay.Overlay

Removes all the ROIs in this Overlay.

clipHeight - Variable in class org.micromanager.ndviewer.overlay.Roi

clipRectMargin() - Method in class org.micromanager.ndviewer.overlay.Line

clipRectMargin() - Method in class org.micromanager.ndviewer.overlay.Roi

clipWidth - Variable in class org.micromanager.ndviewer.overlay.Roi

clipX - Variable in class org.micromanager.ndviewer.overlay.Roi

clipY - Variable in class org.micromanager.ndviewer.overlay.Roi

clone() - Method in class org.micromanager.ndviewer.internal.gui.contrast.LUT

close() - Method in interface org.micromanager.ndviewer.api.ControlsPanelInterface

Viewer closing, release any resources

close() - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Forces the viewer to close, automatically aborting any acquisition in the process.

close() - Method in interface org.micromanager.ndviewer.api.NDViewerDataSource

Called when viewer is closing

close() - Method in class org.micromanager.ndviewer.internal.gui.ImageMaker

close() - Method in class org.micromanager.ndviewer.main.NDViewer

CoalescentExecutor - Class in org.micromanager.ndviewer.internal.gui

CoalescentExecutor(String) - Constructor for class org.micromanager.ndviewer.internal.gui.CoalescentExecutor

CoalescentRunnable - Interface in org.micromanager.ndviewer.internal.gui

A "coalescent" runnable, for use with invokeLaterWithCoalescence.

coalesceWith(CoalescentRunnable) - Method in interface org.micromanager.ndviewer.internal.gui.CoalescentRunnable

Return a new runnable formed by coalescing this instance with another.

collapseOrExpandSideControls(boolean) - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

composite - Variable in class org.micromanager.ndviewer.internal.gui.contrast.HistogramControlsState

COMPOSITE - Static variable in class org.micromanager.ndviewer.overlay.Roi

constrain - Variable in class org.micromanager.ndviewer.overlay.Roi

CONSTRUCTING - Static variable in class org.micromanager.ndviewer.overlay.Roi

contains(int, int) - Method in class org.micromanager.ndviewer.overlay.Line

contains(int, int) - Method in class org.micromanager.ndviewer.overlay.OvalRoi

Tests if the specified point is inside the boundary of this OvalRoi.

contains(Roi) - Method in class org.micromanager.ndviewer.overlay.Overlay

Returns 'true' if this Overlay contains the specified ROI.

contains(int, int) - Method in class org.micromanager.ndviewer.overlay.Roi

contrastControlsInitialized() - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

contrastMaxInput(int) - Method in interface org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel.CursorListener

contrastMinInput(int) - Method in interface org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel.CursorListener

ContrastPanel - Class in org.micromanager.ndviewer.internal.gui.contrast

ContrastPanel(NDViewer) - Constructor for class org.micromanager.ndviewer.internal.gui.contrast.ContrastPanel

ControlsPanelInterface - Interface in org.micromanager.ndviewer.api

Interface for adding custom control JPanels into the tabbed pane on right side

copy() - Method in class org.micromanager.ndviewer.internal.gui.DataViewCoords

copyAttributes(Roi) - Method in class org.micromanager.ndviewer.overlay.Roi

Copy the attributes (outline color, fill color, outline width) of 'roi2' to the this selection.

create() - Static method in class org.micromanager.ndviewer.internal.gui.DisplayCoalescentEDTRunnablePool

create() - Method in class org.micromanager.ndviewer.overlay.Overlay

Returns a new Overlay that has the same properties as this one.

createDefaultControlsState() - Method in class org.micromanager.ndviewer.internal.gui.contrast.ContrastPanel

createInvertedLut() - Method in class org.micromanager.ndviewer.internal.gui.contrast.LUT

createLutFromColor(Color) - Static method in class org.micromanager.ndviewer.internal.gui.contrast.LUT

Creates a color LUT from a Color.

createOverlay(DataViewCoords, OverlayerPlugin) - Method in class org.micromanager.ndviewer.internal.gui.BaseOverlayer

crop(int, int) - Method in class org.micromanager.ndviewer.overlay.Overlay

Removes ROIs having positions outside of the interval defined by firstSlice and lastSlice.

crop(int, int, int, int, int, int) - Method in class org.micromanager.ndviewer.overlay.Overlay

Removes ROIs having a C, Z or T coordinate outside the volume defined by firstC, lastC, firstZ, lastZ, firstT and lastT.

D

dataSource_ - Variable in class org.micromanager.ndviewer.main.NDViewer

DataViewCoords - Class in org.micromanager.ndviewer.internal.gui

DataViewCoords(NDViewerDataSource, double, double, Double, Double, int[], boolean) - Constructor for class org.micromanager.ndviewer.internal.gui.DataViewCoords

defaultFillColor - Static variable in class org.micromanager.ndviewer.overlay.Roi

deselected() - Method in interface org.micromanager.ndviewer.api.ControlsPanelInterface

A different tab was selected

disableAutostretch() - Method in class org.micromanager.ndviewer.internal.gui.contrast.ContrastPanel

DisplayCoalescentEDTRunnablePool - Class in org.micromanager.ndviewer.internal.gui

Provide versions of SwingUtilities.invokeLater that coalesce with other outstanding invocations.

displayImage(Image, HashMap<String, int[]>, DataViewCoords) - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

Called on EDT.

displayOverlay(Overlay) - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

DisplaySettings - Class in org.micromanager.ndviewer.internal.gui.contrast

Class used to store and modify Display Settings of the viewer.

DisplaySettings(JSONObject, Preferences) - Constructor for class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

DisplaySettings(Preferences) - Constructor for class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

displaySettingsChanged() - Method in class org.micromanager.ndviewer.internal.gui.contrast.ContrastPanel

displaySettingsChanged() - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

DisplayWindow - Class in org.micromanager.ndviewer.internal.gui

DisplayWindow(NDViewer, boolean) - Constructor for class org.micromanager.ndviewer.internal.gui.DisplayWindow

draw(Graphics) - Method in class org.micromanager.ndviewer.overlay.Line

Draws this line on the image.

draw(Graphics) - Method in class org.micromanager.ndviewer.overlay.OvalRoi

draw(Graphics) - Method in class org.micromanager.ndviewer.overlay.Roi

draw(Graphics) - Method in class org.micromanager.ndviewer.overlay.TextRoi

Draws the text on the screen, clipped to the ROI.

drawBackgrounds(boolean) - Method in class org.micromanager.ndviewer.overlay.Overlay

drawCursor(Graphics2D, Rectangle, float) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

drawGraph(Graphics2D, Rectangle) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

Draw graph traces.

drawLabels(boolean) - Method in class org.micromanager.ndviewer.overlay.Overlay

drawLine(int, int) - Method in class org.micromanager.ndviewer.overlay.Line

drawMapping(Graphics2D, Rectangle, float, float, double) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

drawNames(boolean) - Method in class org.micromanager.ndviewer.overlay.Overlay

drawOverlay(Overlay, Point2D.Double, double, Graphics, HashMap<String, Object>, double, Point2D.Double) - Method in interface org.micromanager.ndviewer.api.OverlayerPlugin

Called whenever the overlay needs to be drawn.

drawOverlay(Graphics) - Method in class org.micromanager.ndviewer.overlay.Roi

drawOverlay(Graphics) - Method in class org.micromanager.ndviewer.overlay.TextRoi

E

EIGHTBIT - Static variable in class org.micromanager.ndviewer.internal.gui.ImageMaker

enableSubPixelResolution() - Method in class org.micromanager.ndviewer.overlay.Roi

expandDisplayedRangeToInclude(List<HashMap<String, Object>>, List<String>) - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

expandDisplayRangeIfNeeded(int) - Method in class org.micromanager.ndviewer.internal.gui.AxisScroller

F

fillColor - Variable in class org.micromanager.ndviewer.overlay.Roi

fitWindowInScreen(Window) - Static method in class org.micromanager.ndviewer.internal.gui.WindowPositioning

Move and resize a window so that it is on screen and (to the extent possible) fits in the screen.

FixedWidthJPanel - Class in org.micromanager.ndviewer.internal.gui

FixedWidthJPanel() - Constructor for class org.micromanager.ndviewer.internal.gui.FixedWidthJPanel

focusGained(FocusEvent) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

focusLost(FocusEvent) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

FREELINE - Static variable in class org.micromanager.ndviewer.overlay.Roi

FREEROI - Static variable in class org.micromanager.ndviewer.overlay.Roi

G

Geometry - Class in org.micromanager.ndviewer.internal.gui

get(int) - Method in class org.micromanager.ndviewer.overlay.Overlay

Returns the ROI with the specified index or null if the index is invalid.

getActiveChannel() - Method in class org.micromanager.ndviewer.internal.gui.DataViewCoords

getAngle() - Method in class org.micromanager.ndviewer.overlay.Roi

Overridden by PolygonRoi (angle between first two points), TextRoi (text angle) and Line (line angle).

getAngle() - Method in class org.micromanager.ndviewer.overlay.TextRoi

getAntialiased() - Method in class org.micromanager.ndviewer.overlay.TextRoi

Returns the state of the 'antialiased' instance variable.

getAutoscale() - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

getAxesPositions() - Method in class org.micromanager.ndviewer.internal.gui.DataViewCoords

getAxis() - Method in class org.micromanager.ndviewer.internal.gui.AxisScroller

getAxisPosition(String) - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Get the position that the scrollbar with the given label is currently at.

getAxisPosition(String) - Method in class org.micromanager.ndviewer.internal.gui.DataViewCoords

getAxisPosition(String) - Method in class org.micromanager.ndviewer.main.NDViewer

getBitDepth(String) - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

getBoundingRect() - Method in class org.micromanager.ndviewer.overlay.Roi

Deprecated.

replaced by getBounds()

getBounds() - Method in interface org.micromanager.ndviewer.api.NDViewerDataSource

The minimal and maximal pixel coordinates of the image to be viewed

getBounds() - Method in class org.micromanager.ndviewer.internal.gui.contrast.GraphData

getBounds() - Method in class org.micromanager.ndviewer.internal.gui.DataViewCoords

getBounds() - Method in class org.micromanager.ndviewer.overlay.Line

Return the bounding rectangle of this line.

getBounds() - Method in class org.micromanager.ndviewer.overlay.Roi

Return this selection's bounding rectangle.

getBox() - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

getBytes() - Method in class org.micromanager.ndviewer.internal.gui.contrast.LUT

getCanvas() - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

getCanvas() - Method in class org.micromanager.ndviewer.internal.gui.ViewerCanvas

getCanvas() - Method in class org.micromanager.ndviewer.main.NDViewer

getCanvasJPanel() - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Get reference to the JPanel on which image drawing takes place.

getCanvasJPanel() - Method in class org.micromanager.ndviewer.main.NDViewer

getChannels() - Method in class org.micromanager.ndviewer.main.NDViewer

getCoalescenceClass() - Method in interface org.micromanager.ndviewer.internal.gui.CoalescentRunnable

Return a tag class used to group instances that can be coalesced.

getColor(String) - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

getColor() - Static method in class org.micromanager.ndviewer.overlay.Roi

Returns the default (global) color used for drawing ROI outlines.

getColumnCount() - Method in class org.micromanager.ndviewer.internal.gui.MetadataTableModel

getColumnName(int) - Method in class org.micromanager.ndviewer.internal.gui.MetadataTableModel

getContrastGamma(String) - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

getContrastMax(String) - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

getContrastMin(String) - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

getConvexHull() - Method in class org.micromanager.ndviewer.overlay.Roi

getCornerDiameter() - Method in class org.micromanager.ndviewer.overlay.Roi

Returns the rounded rectangle corner diameter (pixels).

getCPosition() - Method in class org.micromanager.ndviewer.overlay.Roi

Returns the channel position of this ROI, or zero if this ROI is not associated with a particular channel.

getCurrentFont() - Method in class org.micromanager.ndviewer.overlay.TextRoi

Returns the current (instance) font.

getCurrentT() - Method in class org.micromanager.ndviewer.main.NDViewer

getCurrentZPosition() - Method in class org.micromanager.ndviewer.main.NDViewer

getCursorListeners() - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

getDebugInfo() - Method in class org.micromanager.ndviewer.overlay.Roi

getDefaultFillColor() - Static method in class org.micromanager.ndviewer.overlay.Roi

getDevicePoint(Point2D.Float, Rectangle, float, float) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

getDevicePointUnclippedXMax(Point2D.Float, Rectangle, float, float) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

getDiskLocation() - Method in interface org.micromanager.ndviewer.api.NDViewerDataSource

Path to where the data is stored on disk, if applicable

getDisplayImageSize() - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Get the size of the ge displayed on screen.

getDisplayImageSize() - Method in class org.micromanager.ndviewer.internal.gui.DataViewCoords

getDisplayImageSize() - Method in class org.micromanager.ndviewer.main.NDViewer

getDisplaySettingsJSON() - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Get the JSON represenation of the internal data structure use for saving display and contrast settings.

getDisplaySettingsJSON() - Method in class org.micromanager.ndviewer.main.NDViewer

getDisplaySettingsObject() - Method in class org.micromanager.ndviewer.main.NDViewer

getDownsampleFactor() - Method in class org.micromanager.ndviewer.internal.gui.DataViewCoords

getDrawBackgrounds() - Method in class org.micromanager.ndviewer.overlay.Overlay

getDrawLabels() - Method in class org.micromanager.ndviewer.overlay.Overlay

getDrawNames() - Method in class org.micromanager.ndviewer.overlay.Overlay

getDrawOffset() - Method in class org.micromanager.ndviewer.overlay.Line

getDrawOffset() - Method in class org.micromanager.ndviewer.overlay.Roi

Returns true if this is a PolygonRoi that supports sub-pixel resolution and polygons are drawn on zoomed images offset down and to the right by 0.5 pixels..

getDrawStringMode() - Method in class org.micromanager.ndviewer.overlay.TextRoi

getFillColor() - Method in class org.micromanager.ndviewer.overlay.Roi

Returns the fill color used to display this ROI, or null if it is displayed transparently.

getFloatBounds() - Method in class org.micromanager.ndviewer.overlay.Roi

Return this selection's bounding rectangle.

getFloatHeight() - Method in class org.micromanager.ndviewer.overlay.Roi

getFloatWidth() - Method in class org.micromanager.ndviewer.overlay.Roi

getFont() - Method in class org.micromanager.ndviewer.internal.gui.TextIcon

Get the Font used to render the text.

getFont() - Static method in class org.micromanager.ndviewer.overlay.TextRoi

Returns the name of the global (default) font.

getForeground() - Method in class org.micromanager.ndviewer.internal.gui.TextIcon

Get the foreground Color used to render the text.

getFractionToReject() - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramUtils

getFullResSourceDataSize() - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Pixel size of the region currently being displayed in full resolution pixels.

getFullResSourceDataSize() - Method in class org.micromanager.ndviewer.internal.gui.DataViewCoords

getFullResSourceDataSize() - Method in class org.micromanager.ndviewer.main.NDViewer

getGlobalJustification() - Static method in class org.micromanager.ndviewer.overlay.TextRoi

Returns the global (default) justification (LEFT, CENTER or RIGHT).

getGraphBounds() - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

getHashCode() - Method in class org.micromanager.ndviewer.overlay.Roi

Returns a hashcode for this Roi that typically changes if it is moved, even though it is still the same object.

getHistogramControlsState() - Method in class org.micromanager.ndviewer.internal.gui.contrast.ContrastPanel

getHistograms() - Method in class org.micromanager.ndviewer.internal.gui.ImageMaker

getIconHeight() - Method in class org.micromanager.ndviewer.internal.gui.TextIcon

Gets the height of this icon.

getIconWidth() - Method in class org.micromanager.ndviewer.internal.gui.TextIcon

Gets the width of this icon.

getImageBitDepth(HashMap<String, Object>) - Method in interface org.micromanager.ndviewer.api.NDViewerDataSource

Get the bits per pixel of image with the given axes positions

getImageForDisplay(HashMap<String, Object>, int, double, double, int, int) - Method in interface org.micromanager.ndviewer.api.NDViewerDataSource

Retrieve image with the given parameters so it can be displayed

getImageKeys() - Method in interface org.micromanager.ndviewer.api.NDViewerDataSource

Get the axes of all available images in this dataset

getIndex(String) - Method in class org.micromanager.ndviewer.overlay.Overlay

Returns the index of the ROI with the specified name, or -1 if not found.

getIntegerPositionFromStringPosition(String, String) - Method in class org.micromanager.ndviewer.main.NDViewer

Convert the position of a string axis to an integer position

getIsLocked() - Method in class org.micromanager.ndviewer.internal.gui.ScrollbarLockIcon

Return true if we are in LOCKED or SUPERLOCKED state.

getIsSuperlocked() - Method in class org.micromanager.ndviewer.internal.gui.AxisScroller

getJustification() - Method in class org.micromanager.ndviewer.overlay.TextRoi

Returns the value of the 'justification' instance variable (LEFT, CENTER or RIGHT).

getLabelColor() - Method in class org.micromanager.ndviewer.overlay.Overlay

getLabelFont() - Method in class org.micromanager.ndviewer.overlay.Overlay

getLatestTags() - Method in class org.micromanager.ndviewer.internal.gui.ImageMaker

getLayout() - Method in class org.micromanager.ndviewer.internal.gui.TextIcon

Get the Layout enum

getLockedState() - Method in class org.micromanager.ndviewer.internal.gui.ScrollbarLockIcon

getMagnification() - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Return ratio between size of pixels on screen and size of full resolution pixels in the imamge.

getMagnification() - Method in class org.micromanager.ndviewer.internal.gui.DataViewCoords

getMagnification() - Method in class org.micromanager.ndviewer.main.NDViewer

getMagnificationFromResLevel() - Method in class org.micromanager.ndviewer.internal.gui.DataViewCoords

Computes the scaling between display pixels and whatever pixels they were derived from

getMax() - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramUtils

getMaxAfterRejectingOutliers() - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramUtils

getMaximum() - Method in class org.micromanager.ndviewer.internal.gui.AxisScroller

getMaximumSize() - Method in class org.micromanager.ndviewer.internal.gui.ScrollbarLockIcon

getMaxResolutionIndex() - Method in interface org.micromanager.ndviewer.api.NDViewerDataSource

Index of the log 2 biggest downsample factor in the pyramid 0 is full resolution, 1 is downsampled by 2x, 2 is downsampled by 4x, etc For a non-multi resolution source, should pass 0

getMin() - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramUtils

getMinAfterRejectingOutliers() - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramUtils

getMinimum() - Method in class org.micromanager.ndviewer.internal.gui.AxisScroller

getMinimumSize() - Method in class org.micromanager.ndviewer.internal.gui.ScrollbarLockIcon

getName() - Method in class org.micromanager.ndviewer.overlay.Roi

Returns the name of this ROI, or null.

getPadding() - Method in class org.micromanager.ndviewer.internal.gui.TextIcon

Get the padding used when rendering the text

getPixelSize() - Method in class org.micromanager.ndviewer.main.NDViewer

getPoint(int) - Method in class org.micromanager.ndviewer.internal.gui.contrast.GraphData

getPoints() - Method in class org.micromanager.ndviewer.overlay.Line

Returns, as a Polygon, the two points that define this line.

getPolygon() - Method in class org.micromanager.ndviewer.overlay.Roi

Returns the outline of this selection as a Polygon, or null if this is a straight line selection.

getPosition() - Method in class org.micromanager.ndviewer.internal.gui.AxisScroller

getPosition() - Method in class org.micromanager.ndviewer.overlay.Roi

Returns the stack position (image number) of this ROI, or zero if the ROI is not associated with a particular stack image.

getPositionPoint(int, int) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

getPreferences() - Method in class org.micromanager.ndviewer.main.NDViewer

getPreferredSize() - Method in class org.micromanager.ndviewer.internal.gui.FixedWidthJPanel

getPreferredSize() - Method in class org.micromanager.ndviewer.internal.gui.ScrollbarAnimateIcon

Overrides Component getPreferredSize().

getPreferredSize() - Method in class org.micromanager.ndviewer.internal.gui.ScrollbarLockIcon

Overrides Component getPreferredSize().

getProperties() - Method in class org.micromanager.ndviewer.overlay.Roi

getProperty(String) - Method in class org.micromanager.ndviewer.overlay.Roi

getPropertyCount() - Method in class org.micromanager.ndviewer.overlay.Roi

getPrototypeOverlay() - Method in class org.micromanager.ndviewer.overlay.Roi

getRawLength() - Method in class org.micromanager.ndviewer.overlay.Line

Returns the length of this line in pixels.

getResolutionIndex() - Method in class org.micromanager.ndviewer.internal.gui.DataViewCoords

Compute the resolution index used for gettting data based on zoom and available resolution indices

getRoundRectArcSize() - Method in class org.micromanager.ndviewer.overlay.Roi

Obsolete; replaced by getCornerDiameter().

getRowCount() - Method in class org.micromanager.ndviewer.internal.gui.MetadataTableModel

getSize() - Method in class org.micromanager.ndviewer.internal.gui.contrast.GraphData

getSize() - Static method in class org.micromanager.ndviewer.overlay.TextRoi

Returns the global (default) font size.

getSourceImageSizeAtResLevel() - Method in class org.micromanager.ndviewer.internal.gui.DataViewCoords

getState() - Method in class org.micromanager.ndviewer.overlay.Roi

getStringPositionFromIntegerPosition(String, int) - Method in class org.micromanager.ndviewer.main.NDViewer

getStroke() - Method in class org.micromanager.ndviewer.overlay.Roi

Returns the Stroke used to draw this ROI, or null if no Stroke is used.

getStrokeColor() - Method in class org.micromanager.ndviewer.overlay.Roi

Returns the the color used to draw the ROI outline or null if the default color is being used.

getStrokeWidth() - Method in class org.micromanager.ndviewer.overlay.Roi

Returns the lineWidth.

getStyle() - Static method in class org.micromanager.ndviewer.overlay.TextRoi

Returns the global (default) font style.

getSummaryMD() - Method in class org.micromanager.ndviewer.main.NDViewer

getText() - Method in class org.micromanager.ndviewer.internal.gui.TextIcon

Get the text String that will be rendered on the Icon

getText() - Method in class org.micromanager.ndviewer.overlay.TextRoi

getTitle() - Method in interface org.micromanager.ndviewer.api.ControlsPanelInterface

provide a String for the title of the panel in the tabbed pane

getTotalPoints() - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramUtils

getTPosition() - Method in class org.micromanager.ndviewer.overlay.Roi

Returns the frame position of this ROI, or zero if this ROI is not associated with a particular frame.

getType() - Method in class org.micromanager.ndviewer.overlay.Roi

getTypeAsString() - Method in class org.micromanager.ndviewer.overlay.Roi

Convenience method that converts Roi type to a human-readable form.

getValueAt(int, int) - Method in class org.micromanager.ndviewer.internal.gui.MetadataTableModel

getViewOffset() - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

get the offset of the top left displayed pixel to relative to top left of the full image (in full resolution coordinates).

getViewOffset() - Method in class org.micromanager.ndviewer.internal.gui.DataViewCoords

getViewOffset() - Method in class org.micromanager.ndviewer.main.NDViewer

getWidth() - Static method in class org.micromanager.ndviewer.overlay.Line

getXBase() - Method in class org.micromanager.ndviewer.overlay.Roi

getXBinSize() - Method in class org.micromanager.ndviewer.internal.gui.contrast.GraphData

getYBase() - Method in class org.micromanager.ndviewer.overlay.Roi

getZPosition() - Method in class org.micromanager.ndviewer.overlay.Roi

Returns the slice position of this ROI, or zero if this ROI is not associated with a particular slice.

GraphData - Class in org.micromanager.ndviewer.internal.gui.contrast

XY graph data structure.

GraphData() - Constructor for class org.micromanager.ndviewer.internal.gui.contrast.GraphData

GraphData.Bounds - Class in org.micromanager.ndviewer.internal.gui.contrast

grow(int, int) - Method in class org.micromanager.ndviewer.overlay.Line

H

HANDLE_SIZE - Static variable in class org.micromanager.ndviewer.overlay.Roi

handleColor - Variable in class org.micromanager.ndviewer.overlay.Roi

histDisplayScrollPane_ - Variable in class org.micromanager.ndviewer.internal.gui.contrast.ContrastPanel

HistogramControlsState - Class in org.micromanager.ndviewer.internal.gui.contrast

HistogramControlsState() - Constructor for class org.micromanager.ndviewer.internal.gui.contrast.HistogramControlsState

HistogramPanel - Class in org.micromanager.ndviewer.internal.gui.contrast

Histogram view.

HistogramPanel() - Constructor for class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

HistogramPanel.CursorListener - Interface in org.micromanager.ndviewer.internal.gui.contrast

histograms_ - Variable in class org.micromanager.ndviewer.internal.gui.contrast.ContrastPanel

HistogramUtils - Class in org.micromanager.ndviewer.internal.gui.contrast

HistogramUtils(int[], int) - Constructor for class org.micromanager.ndviewer.internal.gui.contrast.HistogramUtils

HistogramUtils(int[]) - Constructor for class org.micromanager.ndviewer.internal.gui.contrast.HistogramUtils

HistogramUtils(int[], int, double) - Constructor for class org.micromanager.ndviewer.internal.gui.contrast.HistogramUtils

HistogramUtils(int[], double) - Constructor for class org.micromanager.ndviewer.internal.gui.contrast.HistogramUtils

I

ignoreClipRect - Variable in class org.micromanager.ndviewer.overlay.Roi

ignoreFractionOn() - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

ignoreOutliers - Variable in class org.micromanager.ndviewer.internal.gui.contrast.HistogramControlsState

ImageMaker - Class in org.micromanager.ndviewer.internal.gui

This Class essentially replaces CompositeImage in ImageJ, and uses low level classes to build a multicolor Image from pixels and contrast settings

ImageMaker(NDViewer, NDViewerDataSource) - Constructor for class org.micromanager.ndviewer.internal.gui.ImageMaker

increaseMaxResolutionLevel(int) - Method in interface org.micromanager.ndviewer.api.NDViewerDataSource

Viewer will be viewing at this res index, so make sure it exists

initialize(int) - Method in class org.micromanager.ndviewer.internal.gui.AxisScroller

initializeViewerToLoaded(List<String>, JSONObject, HashMap<String, Object>, HashMap<String, Object>) - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Initialize all controls needed for a dataset loaded from disk where you're not calling newImageArrived each time.

initializeViewerToLoaded(List<String>, JSONObject, HashMap<String, Object>, HashMap<String, Object>) - Method in class org.micromanager.ndviewer.main.NDViewer

insetRectangle(Rectangle, Insets) - Static method in class org.micromanager.ndviewer.internal.gui.Geometry

insettedRectangle(Rectangle, Insets) - Static method in class org.micromanager.ndviewer.internal.gui.Geometry

instanceColor - Variable in class org.micromanager.ndviewer.overlay.Roi

invokeAsLateAsPossibleWithCoalescence(CoalescentRunnable) - Method in class org.micromanager.ndviewer.internal.gui.CoalescentExecutor

Like invokeLaterWithCoalescence, but defers invocation until the last scheduled task on the event queue is processed.

invokeAsLateAsPossibleWithCoalescence(CoalescentRunnable) - Method in class org.micromanager.ndviewer.internal.gui.DisplayCoalescentEDTRunnablePool

Like invokeLaterWithCoalescence, but defers invocation until the last scheduled task on the event queue is processed.

invokeLaterWithCoalescence(CoalescentRunnable) - Method in class org.micromanager.ndviewer.internal.gui.DisplayCoalescentEDTRunnablePool

Invoke the given runnable on the EDT, coalescing multiple invocations on the event queue.

isAcquisitionPaused() - Method in class org.micromanager.ndviewer.main.NDViewer

isActive(String) - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

isAntialiased() - Static method in class org.micromanager.ndviewer.overlay.TextRoi

Returns the state of global 'antialiasedText' variable, which is used by the "Fonts" widget.

isArea() - Method in class org.micromanager.ndviewer.overlay.Roi

Returns 'true' if this is an area selection.

isCalibrationBar() - Method in class org.micromanager.ndviewer.overlay.Overlay

isCompositeMode() - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

isCompositMode() - Method in class org.micromanager.ndviewer.main.NDViewer

isCursor() - Method in class org.micromanager.ndviewer.overlay.Roi

isDrawingTool() - Method in class org.micromanager.ndviewer.overlay.Roi

Returns 'true' if this is an ROI primarily used from drawing (e.g., TextRoi or Arrow).

isDrawingTool() - Method in class org.micromanager.ndviewer.overlay.TextRoi

isFinished() - Method in interface org.micromanager.ndviewer.api.NDViewerAcqInterface

isImageXYBounded() - Method in class org.micromanager.ndviewer.main.NDViewer

isInitialized() - Method in class org.micromanager.ndviewer.internal.gui.AxisScroller

isIntegerAxis(String) - Method in class org.micromanager.ndviewer.main.NDViewer

isLine() - Method in class org.micromanager.ndviewer.overlay.Roi

Returns 'true' if this is a line selection.

isLogHistogram() - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

isMac() - Static method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

isOutOfRange(int) - Method in class org.micromanager.ndviewer.internal.gui.AxisScroller

isPaused() - Method in interface org.micromanager.ndviewer.api.NDViewerAcqInterface

isRGB() - Method in class org.micromanager.ndviewer.internal.gui.DataViewCoords

isScrollerAxisLocked(String) - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

isSyncChannels() - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

K

keyPressed(KeyEvent) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

keyReleased(KeyEvent) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

keyTyped(KeyEvent) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

L

LEFT - Static variable in class org.micromanager.ndviewer.overlay.TextRoi

Line - Class in org.micromanager.ndviewer.overlay

This class represents a straight line selection.

Line(int, int, int, int) - Constructor for class org.micromanager.ndviewer.overlay.Line

Creates a new straight line selection using the specified starting and ending offscreen integer coordinates.

Line(double, double, double, double) - Constructor for class org.micromanager.ndviewer.overlay.Line

Creates a new straight line selection using the specified starting and ending offscreen double coordinates.

LINE - Static variable in class org.micromanager.ndviewer.overlay.Roi

lineWidth - Static variable in class org.micromanager.ndviewer.overlay.Roi

logHist - Variable in class org.micromanager.ndviewer.internal.gui.contrast.HistogramControlsState

LUT - Class in org.micromanager.ndviewer.internal.gui.contrast

This is an indexed color model that allows an lower and upper bound to be specified.

LUT(byte[], byte[], byte[]) - Constructor for class org.micromanager.ndviewer.internal.gui.contrast.LUT

Constructs a LUT from red, green and blue byte arrays, which must have a length of 256.

LUT(int, int, byte[], byte[], byte[]) - Constructor for class org.micromanager.ndviewer.internal.gui.contrast.LUT

Constructs a LUT from red, green and blue byte arrays, where 'bits' must be 8 and 'size' must be less than or equal to 256.

LUT(IndexColorModel, double, double) - Constructor for class org.micromanager.ndviewer.internal.gui.contrast.LUT

M

mag - Variable in class org.micromanager.ndviewer.overlay.Roi

makeLUT(Color, double) - Static method in class org.micromanager.ndviewer.internal.gui.ImageMaker

makeOrGetImage(DataViewCoords) - Method in class org.micromanager.ndviewer.internal.gui.ImageMaker

Do neccesary calcualtion to get image for display

max - Variable in class org.micromanager.ndviewer.internal.gui.contrast.LUT

MetadataPanel - Class in org.micromanager.ndviewer.internal.gui

MetadataPanel() - Constructor for class org.micromanager.ndviewer.internal.gui.MetadataPanel

Creates new form MetadataPanelNew

MetadataTableModel - Class in org.micromanager.ndviewer.internal.gui

min - Variable in class org.micromanager.ndviewer.internal.gui.contrast.LUT

mouseClicked(MouseEvent) - Method in class org.micromanager.ndviewer.internal.gui.CanvasMouseListener

mouseDragged(MouseEvent) - Method in class org.micromanager.ndviewer.internal.gui.CanvasMouseListener

mouseEntered(MouseEvent) - Method in class org.micromanager.ndviewer.internal.gui.CanvasMouseListener

mouseExited(MouseEvent) - Method in class org.micromanager.ndviewer.internal.gui.CanvasMouseListener

mouseMoved(MouseEvent) - Method in class org.micromanager.ndviewer.internal.gui.CanvasMouseListener

mouseMoved(MouseEvent) - Method in class org.micromanager.ndviewer.overlay.Line

mousePressed(MouseEvent) - Method in class org.micromanager.ndviewer.internal.gui.CanvasMouseListener

mouseReleased(MouseEvent) - Method in class org.micromanager.ndviewer.internal.gui.CanvasMouseListener

mouseWheelMoved(MouseWheelEvent) - Method in class org.micromanager.ndviewer.internal.gui.CanvasMouseListener

MOVING - Static variable in class org.micromanager.ndviewer.overlay.Roi

MOVING_HANDLE - Static variable in class org.micromanager.ndviewer.overlay.Roi

N

NDViewer - Class in org.micromanager.ndviewer.main

NDViewer(NDViewerDataSource, NDViewerAcqInterface, JSONObject, double, boolean) - Constructor for class org.micromanager.ndviewer.main.NDViewer

NDViewer(NDViewerDataSource, NDViewerAcqInterface, JSONObject, double, boolean, String) - Constructor for class org.micromanager.ndviewer.main.NDViewer

NDViewerAcqInterface - Interface in org.micromanager.ndviewer.api

This interface is used to pass an acquisition to the viewer, so that its controls for pausing, aborting, and close can be used This is optional functionality, as the viewer doesn't need an acqusition to work

NDViewerAPI - Interface in org.micromanager.ndviewer.api

Interface for external methods of an NDViewer.

NDViewerDataSource - Interface in org.micromanager.ndviewer.api

Interface for a source of image data.

nearestPointInRectangle(Point, Rectangle) - Static method in class org.micromanager.ndviewer.internal.gui.Geometry

newImageArrived(HashMap<String, Object>) - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Call this whenever a new image arrives to optionally show it, and also so that the size of the scrollbars expands.

newImageArrived(HashMap<String, Object>) - Method in class org.micromanager.ndviewer.main.NDViewer

Signal to viewer that a new image is available.

nonScalable - Variable in class org.micromanager.ndviewer.overlay.Roi

NORMAL - Static variable in class org.micromanager.ndviewer.overlay.Roi

NOT_PASTING - Static variable in class org.micromanager.ndviewer.overlay.Roi

NUM_DISPLAY_HIST_BINS - Static variable in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

O

oldHeight - Variable in class org.micromanager.ndviewer.overlay.Roi

oldWidth - Variable in class org.micromanager.ndviewer.overlay.Roi

oldX - Variable in class org.micromanager.ndviewer.overlay.Roi

oldY - Variable in class org.micromanager.ndviewer.overlay.Roi

onAnimationToggle(AxisScroller, boolean) - Method in class org.micromanager.ndviewer.main.NDViewer

onCanvasResize(int, int) - Method in class org.micromanager.ndviewer.internal.gui.ViewerCanvas

Set the size of the image displayed on screen, which is not neccesarily the same as the image pixels read to create it

onCanvasResize(int, int) - Method in class org.micromanager.ndviewer.main.NDViewer

onCanvasResized(int, int) - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

onContrastUpdated() - Method in class org.micromanager.ndviewer.main.NDViewer

onDisplayClose() - Method in class org.micromanager.ndviewer.internal.gui.AxisScroller

onDisplayClose() - Method in class org.micromanager.ndviewer.internal.gui.contrast.ContrastPanel

onDisplayClose() - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

onDisplayClose() - Method in class org.micromanager.ndviewer.internal.gui.ScrollbarLockIcon

onDisplayClose() - Method in class org.micromanager.ndviewer.internal.gui.ViewerCanvas

onePixelWide - Static variable in class org.micromanager.ndviewer.overlay.Roi

onGammaCurve(double) - Method in interface org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel.CursorListener

onLeftCursor(double) - Method in interface org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel.CursorListener

onLockToggle(String, ScrollbarLockIcon.LockedState) - Method in class org.micromanager.ndviewer.internal.gui.AxisScroller

The lock icon was clicked; update our state to suit.

onRightCursor(double) - Method in interface org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel.CursorListener

onScollersAdded() - Method in class org.micromanager.ndviewer.main.NDViewer

onScollPositionChanged(AxisScroller, int) - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

onScollPositionChanged(AxisScroller, int) - Method in class org.micromanager.ndviewer.main.NDViewer

onScrollersAdded() - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

org.micromanager.ndviewer.api - package org.micromanager.ndviewer.api

org.micromanager.ndviewer.internal.gui - package org.micromanager.ndviewer.internal.gui

org.micromanager.ndviewer.internal.gui.contrast - package org.micromanager.ndviewer.internal.gui.contrast

org.micromanager.ndviewer.main - package org.micromanager.ndviewer.main

org.micromanager.ndviewer.overlay - package org.micromanager.ndviewer.overlay

OVAL - Static variable in class org.micromanager.ndviewer.overlay.Roi

OvalRoi - Class in org.micromanager.ndviewer.overlay

Oval region of interest

OvalRoi(int, int, int, int) - Constructor for class org.micromanager.ndviewer.overlay.OvalRoi

Creates an OvalRoi.

OvalRoi(double, double, double, double) - Constructor for class org.micromanager.ndviewer.overlay.OvalRoi

Creates an OvalRoi using double arguments.

Overlay - Class in org.micromanager.ndviewer.overlay

An Overlay is a list of ROIs that can be drawn non-destructively on an Image.

Overlay() - Constructor for class org.micromanager.ndviewer.overlay.Overlay

Constructs an empty Overlay.

Overlay(Roi) - Constructor for class org.micromanager.ndviewer.overlay.Overlay

Constructs an Overlay and adds the specified ROI.

overlay - Variable in class org.micromanager.ndviewer.overlay.Roi

OverlayerPlugin - Interface in org.micromanager.ndviewer.api

Interface for a plugin to draw customized overlays on the image window.

P

paint(Graphics) - Method in class org.micromanager.ndviewer.internal.gui.ScrollbarAnimateIcon

paint(Graphics) - Method in class org.micromanager.ndviewer.internal.gui.ScrollbarLockIcon

paintComponent(Graphics) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

paintIcon(Component, Graphics, int, int) - Method in class org.micromanager.ndviewer.internal.gui.TextIcon

Paint the icons of this compound icon at the specified location

pan(int, int) - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Change the view offset by the specified amount.

pan(int, int) - Method in class org.micromanager.ndviewer.main.NDViewer

percentToIgnore() - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

percentToIgnore - Variable in class org.micromanager.ndviewer.internal.gui.contrast.HistogramControlsState

POINT - Static variable in class org.micromanager.ndviewer.overlay.Roi

POLYGON - Static variable in class org.micromanager.ndviewer.overlay.Roi

POLYLINE - Static variable in class org.micromanager.ndviewer.overlay.Roi

prepareForClose() - Method in class org.micromanager.ndviewer.internal.gui.MetadataPanel

previousRoi - Static variable in class org.micromanager.ndviewer.overlay.Roi

propertyChange(PropertyChangeEvent) - Method in class org.micromanager.ndviewer.internal.gui.TextIcon

R

RECTANGLE - Static variable in class org.micromanager.ndviewer.overlay.Roi

redrawOverlay() - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

trigger redraw of the image overlay.

redrawOverlay() - Method in class org.micromanager.ndviewer.main.NDViewer

refresh() - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

remove(int) - Method in class org.micromanager.ndviewer.overlay.Overlay

Removes the ROI with the specified index from this Overlay.

remove(Roi) - Method in class org.micromanager.ndviewer.overlay.Overlay

Removes the specified ROI from this Overlay.

remove(String) - Method in class org.micromanager.ndviewer.overlay.Overlay

Removes all ROIs that have the specified name.

removeContrastControls(String) - Method in class org.micromanager.ndviewer.internal.gui.contrast.ContrastPanel

removeContrastControls(String) - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

removeCursorListeners(HistogramPanel.CursorListener) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

removeImageProcessor(String) - Method in class org.micromanager.ndviewer.internal.gui.ImageMaker

repaintCanvas() - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

requestToClose() - Method in class org.micromanager.ndviewer.main.NDViewer

Called when window is x-ed out by user.

RESIZING - Static variable in class org.micromanager.ndviewer.overlay.Roi

RIGHT - Static variable in class org.micromanager.ndviewer.overlay.TextRoi

Roi - Class in org.micromanager.ndviewer.overlay

A rectangular region of interest and superclass for the other ROI classes.

Roi(int, int, int, int) - Constructor for class org.micromanager.ndviewer.overlay.Roi

Creates a rectangular ROI.

Roi(double, double, double, double) - Constructor for class org.micromanager.ndviewer.overlay.Roi

Creates a rectangular ROI using double arguments.

Roi(int, int, int, int, int) - Constructor for class org.micromanager.ndviewer.overlay.Roi

Creates a new rounded rectangular ROI.

Roi(double, double, double, double, int) - Constructor for class org.micromanager.ndviewer.overlay.Roi

Creates a rounded rectangular ROI using double arguments.

Roi(Rectangle) - Constructor for class org.micromanager.ndviewer.overlay.Roi

Creates a new rectangular Roi.

ROIColor - Static variable in class org.micromanager.ndviewer.overlay.Roi

S

ScrollbarAnimateIcon - Class in org.micromanager.ndviewer.internal.gui

This class displays a little play/pause icon with a single-character label, and is used for handling animation of an AxisScroller.

ScrollbarAnimateIcon(String) - Constructor for class org.micromanager.ndviewer.internal.gui.ScrollbarAnimateIcon

ScrollbarLockIcon - Class in org.micromanager.ndviewer.internal.gui

ScrollbarLockIcon(AxisScroller, String) - Constructor for class org.micromanager.ndviewer.internal.gui.ScrollbarLockIcon

ScrollbarLockIcon.LockedState - Enum in org.micromanager.ndviewer.internal.gui

This enum tracks the possible states of the lock icon.

selected() - Method in interface org.micromanager.ndviewer.api.ControlsPanelInterface

The tab containing this panel was selected

setActive(String, boolean) - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

setActiveChannel(String) - Method in class org.micromanager.ndviewer.internal.gui.DataViewCoords

setAngle(double) - Method in class org.micromanager.ndviewer.overlay.TextRoi

setAnimateFPS(double) - Method in class org.micromanager.ndviewer.main.NDViewer

setAntialiased(boolean) - Method in class org.micromanager.ndviewer.overlay.TextRoi

Sets the 'antialiased' instance variable.

setAutoBounds() - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

setAutoscale(boolean) - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

setAutoScale() - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

Auto-scales Y axis.

setAxisPosition(String, int) - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Set the scrollbar with a given axis label to a position.

setAxisPosition(String, Object) - Method in class org.micromanager.ndviewer.internal.gui.DataViewCoords

setAxisPosition(String, int) - Method in class org.micromanager.ndviewer.main.NDViewer

setBounds(double, double, double, double) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

setBounds(GraphData.Bounds) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

setChannelColor(String, Color) - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Set display settings for channel with the given name.

setChannelColor(String, Color) - Method in class org.micromanager.ndviewer.main.NDViewer

setChannelContrastFromFirst() - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

setColor(String, Color) - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

setColor(Color) - Static method in class org.micromanager.ndviewer.overlay.Roi

Sets the default (global) color used for ROI outlines.

setCompositeMode(boolean) - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

setCompositeMode(boolean) - Method in class org.micromanager.ndviewer.main.NDViewer

setContrastMax(String, int) - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

setContrastMin(String, int) - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

setCornerDiameter(int) - Method in class org.micromanager.ndviewer.overlay.Roi

Sets the rounded rectangle corner diameter (pixels).

setCurrentFont(Font) - Method in class org.micromanager.ndviewer.overlay.TextRoi

Set the current (instance) font.

setCursors(double, double, double) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

setCursorText(String, String) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

setCustomCanvasMouseListener(CanvasMouseListenerInterface) - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Add a custom object to respond to different types of mouse events on the canvas.

setCustomCanvasMouseListener(CanvasMouseListenerInterface) - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

setCustomCanvasMouseListener(CanvasMouseListenerInterface) - Method in class org.micromanager.ndviewer.main.NDViewer

setData(double[], double[]) - Method in class org.micromanager.ndviewer.internal.gui.contrast.GraphData

setData(double[]) - Method in class org.micromanager.ndviewer.internal.gui.contrast.GraphData

setData(int[]) - Method in class org.micromanager.ndviewer.internal.gui.contrast.GraphData

setData(GraphData) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

setDataSource(GraphData) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

setDefaultAngle(double) - Static method in class org.micromanager.ndviewer.overlay.TextRoi

Sets the default angle.

setDefaultFillColor(Color) - Static method in class org.micromanager.ndviewer.overlay.Roi

setDefaultFillColor(Color) - Static method in class org.micromanager.ndviewer.overlay.TextRoi

Sets the default fill (background) color.

setDisplayImageSize(int, int) - Method in class org.micromanager.ndviewer.internal.gui.DataViewCoords

setDisplaySettingsFromGUI() - Method in class org.micromanager.ndviewer.internal.gui.contrast.ContrastPanel

setDisplaySettingsFromGUI() - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

setDrawOffset(boolean) - Method in class org.micromanager.ndviewer.overlay.Line

setDrawOffset(boolean) - Method in class org.micromanager.ndviewer.overlay.Roi

setDrawStringMode(boolean) - Method in class org.micromanager.ndviewer.overlay.TextRoi

setFillColor(Color) - Method in class org.micromanager.ndviewer.overlay.Overlay

Sets the fill color of all the ROIs in this overlay.

setFillColor(Color) - Method in class org.micromanager.ndviewer.overlay.Roi

Sets the fill color used to display this ROI, or set to null to display it transparently.

setFont(Font) - Method in class org.micromanager.ndviewer.internal.gui.TextIcon

Set the Font to be used for rendering the text

setFont(String, int, int) - Static method in class org.micromanager.ndviewer.overlay.TextRoi

Sets the global font face, size and style that will be used by TextROIs interactively created using the text tool.

setFont(String, int, int, boolean) - Static method in class org.micromanager.ndviewer.overlay.TextRoi

Sets the font face, size, style and antialiasing mode that will be used by TextROIs interactively created using the text tool.

setForeground(Color) - Method in class org.micromanager.ndviewer.internal.gui.TextIcon

Set the foreground Color to be used for rendering the text

setFractionToReject(double) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramUtils

setFullResSourceDataSize(double, double) - Method in class org.micromanager.ndviewer.internal.gui.DataViewCoords

setGamma(String, double) - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

setGamma(double) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

setGlobalJustification(int) - Static method in class org.micromanager.ndviewer.overlay.TextRoi

Sets the 'justification' instance variable (must be LEFT, CENTER or RIGHT)

setIgnoreClipRect(boolean) - Method in class org.micromanager.ndviewer.overlay.Roi

setIgnoreOutliers(boolean) - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

setIgnoreOutliersPercentage(double) - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

setImageBounds(int[]) - Method in class org.micromanager.ndviewer.internal.gui.DataViewCoords

setImageEvent(HashMap<String, Object>, boolean) - Method in class org.micromanager.ndviewer.main.NDViewer

Called when scrollbars move

setImageMetadata(JSONObject) - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

setIsAnimated(boolean) - Method in class org.micromanager.ndviewer.internal.gui.AxisScroller

setIsAnimated(boolean) - Method in class org.micromanager.ndviewer.internal.gui.ScrollbarAnimateIcon

setIsCalibrationBar(boolean) - Method in class org.micromanager.ndviewer.overlay.Overlay

setIsCursor(boolean) - Method in class org.micromanager.ndviewer.overlay.Roi

setJustification(int) - Method in class org.micromanager.ndviewer.overlay.TextRoi

Sets the 'justification' instance variable (must be LEFT, CENTER or RIGHT)

setLabelColor(Color) - Method in class org.micromanager.ndviewer.overlay.Overlay

setLabelFont(Font) - Method in class org.micromanager.ndviewer.overlay.Overlay

setLocation(int, int) - Method in class org.micromanager.ndviewer.overlay.Line

setLocation(int, int) - Method in class org.micromanager.ndviewer.overlay.Roi

Set the location of the ROI in image coordinates.

setLocation(double, double) - Method in class org.micromanager.ndviewer.overlay.Roi

Set the location of the ROI in image coordinates.

setLockedState(ScrollbarLockIcon.LockedState) - Method in class org.micromanager.ndviewer.internal.gui.ScrollbarLockIcon

setLogHist(boolean) - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

setMargins(float, float) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

setMetadata(JSONObject) - Method in class org.micromanager.ndviewer.internal.gui.MetadataTableModel

setName(String) - Method in class org.micromanager.ndviewer.overlay.Roi

Sets the name of this ROI.

setNonScalable(boolean) - Method in class org.micromanager.ndviewer.overlay.Roi

Set 'nonScalable' true to have TextRois in a display list drawn at a fixed location and size.

setOverlay(Overlay) - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Set a custom overlay object to be displayed on top of the image.

setOverlay(Overlay) - Method in class org.micromanager.ndviewer.main.NDViewer

setOverlayerPlugin(OverlayerPlugin) - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Set a custom object to provide overlays.

setOverlayerPlugin(OverlayerPlugin) - Method in class org.micromanager.ndviewer.main.NDViewer

setPadding(int) - Method in class org.micromanager.ndviewer.internal.gui.TextIcon

By default the size of the Icon is based on the size of the rendered text.

setPaused(boolean) - Method in interface org.micromanager.ndviewer.api.NDViewerAcqInterface

setPausedAction(boolean) - Method in class org.micromanager.ndviewer.main.NDViewer

setPosition(int) - Method in class org.micromanager.ndviewer.internal.gui.AxisScroller

Set scrollbar position, but don't fire action listener

setPosition(int) - Method in class org.micromanager.ndviewer.overlay.Roi

Sets the stack position (image number) of this ROI.

setPosition(int, int, int) - Method in class org.micromanager.ndviewer.overlay.Roi

Sets the hyperstack position of this ROI.

setProperty(String, String) - Method in class org.micromanager.ndviewer.overlay.Roi

setPrototypeOverlay(Overlay) - Method in class org.micromanager.ndviewer.overlay.Roi

setReadTimeMetadataFunction(Function<JSONObject, Long>) - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Optional: Pass in a function that tells how to extract elapsed ms from image metadata, for display purposes.

setReadTimeMetadataFunction(Function<JSONObject, Long>) - Method in class org.micromanager.ndviewer.main.NDViewer

setReadZMetadataFunction(Function<JSONObject, Double>) - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Optional: Pass in a function that tells how to extract z position in µm from image tags, for display purposes.

setReadZMetadataFunction(Function<JSONObject, Double>) - Method in class org.micromanager.ndviewer.main.NDViewer

setRotationCenter(double, double) - Method in class org.micromanager.ndviewer.overlay.Roi

setRoundRectArcSize(int) - Method in class org.micromanager.ndviewer.overlay.Roi

Obsolete; replaced by setCornerDiameter().

setShowScaleBar(boolean) - Method in class org.micromanager.ndviewer.internal.gui.BaseOverlayer

setShowTimeLabel(boolean) - Method in class org.micromanager.ndviewer.internal.gui.BaseOverlayer

setShowZPosition(boolean) - Method in class org.micromanager.ndviewer.internal.gui.BaseOverlayer

setStroke(BasicStroke) - Method in class org.micromanager.ndviewer.overlay.Roi

Sets the Stroke used to draw this ROI.

setStrokeColor(Color) - Method in class org.micromanager.ndviewer.overlay.Overlay

Sets the stroke color of all the ROIs in this overlay.

setStrokeColor(Color) - Method in class org.micromanager.ndviewer.overlay.Roi

Sets the color used by this ROI to draw its outline.

setStrokeWidth(float) - Method in class org.micromanager.ndviewer.overlay.Line

setStrokeWidth(float) - Method in class org.micromanager.ndviewer.overlay.Roi

Sets the width of the line used to draw this ROI.

setStrokeWidth(double) - Method in class org.micromanager.ndviewer.overlay.Roi

This is a version of setStrokeWidth() that accepts a double argument.

setSummaryMetadata(JSONObject) - Method in class org.micromanager.ndviewer.internal.gui.MetadataPanel

setSyncChannels(boolean) - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

setText(String) - Method in class org.micromanager.ndviewer.internal.gui.TextIcon

Set the text to be rendered on the Icon

setTitle(String) - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

setTraceStyle(boolean, Color) - Method in class org.micromanager.ndviewer.internal.gui.contrast.HistogramPanel

setUpBoundsMemory(Window, Preferences) - Static method in class org.micromanager.ndviewer.internal.gui.WindowPositioning

Set the window bounds to the last saved ones, and arrange to save the bounds for future recall by this method.

setUpLocationMemory(Window, Preferences) - Static method in class org.micromanager.ndviewer.internal.gui.WindowPositioning

Set the window location to the last saved one, and arrange to save the location for future recall by this method.

setViewOffset(double, double) - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

set the offset of the top left displayed pixel to relative to top left of the full image (in full resolution coordinates).

setViewOffset(double, double) - Method in class org.micromanager.ndviewer.internal.gui.DataViewCoords

setViewOffset(double, double) - Method in class org.micromanager.ndviewer.main.NDViewer

setWidth(int) - Static method in class org.micromanager.ndviewer.overlay.Line

setWindowTitle(String) - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Set the text in the windows frame.

setWindowTitle(String) - Method in class org.micromanager.ndviewer.main.NDViewer

setXBinSize(double) - Method in class org.micromanager.ndviewer.internal.gui.contrast.GraphData

showFolder() - Method in class org.micromanager.ndviewer.main.NDViewer

showScaleBar(boolean) - Method in class org.micromanager.ndviewer.main.NDViewer

showTimeLabel(boolean) - Method in class org.micromanager.ndviewer.main.NDViewer

showZPositionLabel(boolean) - Method in class org.micromanager.ndviewer.main.NDViewer

shutdown() - Method in class org.micromanager.ndviewer.internal.gui.BaseOverlayer

shutdownNow() - Method in class org.micromanager.ndviewer.internal.gui.CoalescentExecutor

SIXTEENBIT - Static variable in class org.micromanager.ndviewer.internal.gui.ImageMaker

size() - Method in class org.micromanager.ndviewer.overlay.Overlay

Returns the number of ROIs in this Overlay.

split(String, String) - Static method in class org.micromanager.ndviewer.overlay.TextRoi

Splits a string into substring using the characters contained in the second argument as the delimiter set.

startxd - Variable in class org.micromanager.ndviewer.overlay.Line

startyd - Variable in class org.micromanager.ndviewer.overlay.Line

stroke - Variable in class org.micromanager.ndviewer.overlay.Roi

strokeColor - Variable in class org.micromanager.ndviewer.overlay.Roi

submitNonCoalescent(Runnable) - Method in class org.micromanager.ndviewer.internal.gui.CoalescentExecutor

submitWithCoalescence(CoalescentRunnable) - Method in class org.micromanager.ndviewer.internal.gui.CoalescentExecutor

Invoke the given runnable on the EDT, coalescing multiple invocations on the event queue.

subPixelResolution() - Method in class org.micromanager.ndviewer.overlay.Line

Always returns true.

subPixelResolution() - Method in class org.micromanager.ndviewer.overlay.Roi

Returns true if this is a slection that supports sub-pixel resolution.

superlock() - Method in class org.micromanager.ndviewer.internal.gui.AxisScroller

superlockAllScrollers() - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

superlockAllScrollers() - Method in class org.micromanager.ndviewer.main.NDViewer

syncChannels - Variable in class org.micromanager.ndviewer.internal.gui.contrast.HistogramControlsState

T

temporarilyHide() - Method in class org.micromanager.ndviewer.overlay.Roi

Deprecated

TextIcon - Class in org.micromanager.ndviewer.internal.gui

TextIcon(JComponent, String) - Constructor for class org.micromanager.ndviewer.internal.gui.TextIcon

Convenience constructor to create a TextIcon with a HORIZONTAL layout.

TextIcon(JComponent, String, TextIcon.Layout) - Constructor for class org.micromanager.ndviewer.internal.gui.TextIcon

Create a TextIcon specifying all the properties.

TextIcon.Layout - Enum in org.micromanager.ndviewer.internal.gui

TextRoi - Class in org.micromanager.ndviewer.overlay

This class is a rectangular ROI containing text.

TextRoi(int, int, String) - Constructor for class org.micromanager.ndviewer.overlay.TextRoi

Creates a TextRoi.

TextRoi(double, double, String) - Constructor for class org.micromanager.ndviewer.overlay.TextRoi

Creates a TextRoi using sub-pixel coordinates.

TextRoi(int, int, String, Font) - Constructor for class org.micromanager.ndviewer.overlay.TextRoi

Creates a TextRoi using the specified location and Font.

TextRoi(double, double, String, Font) - Constructor for class org.micromanager.ndviewer.overlay.TextRoi

Creates a TextRoi using the specified sub-pixel location and Font.

TextRoi(double, double, double, double, String, Font) - Constructor for class org.micromanager.ndviewer.overlay.TextRoi

Creates a TextRoi using the specified location, size and Font.

toArray() - Method in class org.micromanager.ndviewer.overlay.Overlay

Returns on array containing the ROIs in this Overlay.

toFloat(int[]) - Static method in class org.micromanager.ndviewer.overlay.Roi

Converts an int array to a float array.

toInt(float[]) - Static method in class org.micromanager.ndviewer.overlay.Roi

Converts a float array to an int array using truncation.

toInt(float[], int[], int) - Static method in class org.micromanager.ndviewer.overlay.Roi

toIntR(float[]) - Static method in class org.micromanager.ndviewer.overlay.Roi

Converts a float array to an int array using rounding.

toJSON() - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

toString() - Method in class org.micromanager.ndviewer.internal.gui.contrast.DisplaySettings

toString() - Method in class org.micromanager.ndviewer.overlay.Overlay

toString() - Method in class org.micromanager.ndviewer.overlay.Roi

TRACED_ROI - Static variable in class org.micromanager.ndviewer.overlay.Roi

translate(int, int) - Method in class org.micromanager.ndviewer.overlay.Overlay

Moves all the ROIs in this overlay.

translate(double, double) - Method in class org.micromanager.ndviewer.overlay.Overlay

Moves all the ROIs in this overlay.

type - Variable in class org.micromanager.ndviewer.overlay.Roi

U

unlock() - Method in class org.micromanager.ndviewer.internal.gui.AxisScroller

unlockAllScroller() - Method in class org.micromanager.ndviewer.main.NDViewer

unlockAllScrollers() - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

update() - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

Redraw current image and any overlay

update() - Method in class org.micromanager.ndviewer.main.NDViewer

updateFullWindow - Variable in class org.micromanager.ndviewer.overlay.Roi

updateHistogramData(HashMap<String, int[]>) - Method in class org.micromanager.ndviewer.internal.gui.contrast.ContrastPanel

updateImageMetadata(JSONObject) - Method in class org.micromanager.ndviewer.internal.gui.MetadataPanel

V

valueOf(String) - Static method in enum org.micromanager.ndviewer.internal.gui.ScrollbarLockIcon.LockedState

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.micromanager.ndviewer.internal.gui.TextIcon.Layout

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.micromanager.ndviewer.internal.gui.ScrollbarLockIcon.LockedState

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.micromanager.ndviewer.internal.gui.TextIcon.Layout

Returns an array containing the constants of this enum type, in the order they are declared.

viewCoords_ - Variable in class org.micromanager.ndviewer.main.NDViewer

ViewerCanvas - Class in org.micromanager.ndviewer.internal.gui

ViewerCanvas(NDViewer) - Constructor for class org.micromanager.ndviewer.internal.gui.ViewerCanvas

W

waitForCompletion() - Method in interface org.micromanager.ndviewer.api.NDViewerAcqInterface

wideLine - Variable in class org.micromanager.ndviewer.overlay.Roi

windowActivated(WindowEvent) - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

windowClosed(WindowEvent) - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

windowClosing(WindowEvent) - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

windowDeactivated(WindowEvent) - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

windowDeiconified(WindowEvent) - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

windowIconified(WindowEvent) - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

windowOpened(WindowEvent) - Method in class org.micromanager.ndviewer.internal.gui.DisplayWindow

WindowPositioning - Class in org.micromanager.ndviewer.internal.gui

Save and restore window locations and sizes; cascade windows.

X

x1 - Variable in class org.micromanager.ndviewer.overlay.Line

x1d - Variable in class org.micromanager.ndviewer.overlay.Line

x1R - Variable in class org.micromanager.ndviewer.overlay.Line

x2 - Variable in class org.micromanager.ndviewer.overlay.Line

x2d - Variable in class org.micromanager.ndviewer.overlay.Line

x2R - Variable in class org.micromanager.ndviewer.overlay.Line

xMax - Variable in class org.micromanager.ndviewer.internal.gui.contrast.GraphData.Bounds

xMax - Variable in class org.micromanager.ndviewer.overlay.Roi

xMax_ - Variable in class org.micromanager.ndviewer.internal.gui.DataViewCoords

xMin - Variable in class org.micromanager.ndviewer.internal.gui.contrast.GraphData.Bounds

xMin_ - Variable in class org.micromanager.ndviewer.internal.gui.DataViewCoords

Y

y1 - Variable in class org.micromanager.ndviewer.overlay.Line

y1d - Variable in class org.micromanager.ndviewer.overlay.Line

y1R - Variable in class org.micromanager.ndviewer.overlay.Line

y2 - Variable in class org.micromanager.ndviewer.overlay.Line

y2d - Variable in class org.micromanager.ndviewer.overlay.Line

y2R - Variable in class org.micromanager.ndviewer.overlay.Line

yMax - Variable in class org.micromanager.ndviewer.internal.gui.contrast.GraphData.Bounds

yMax - Variable in class org.micromanager.ndviewer.overlay.Roi

yMax_ - Variable in class org.micromanager.ndviewer.internal.gui.DataViewCoords

yMin - Variable in class org.micromanager.ndviewer.internal.gui.contrast.GraphData.Bounds

yMin_ - Variable in class org.micromanager.ndviewer.internal.gui.DataViewCoords

Z

zoom(double, Point) - Method in interface org.micromanager.ndviewer.api.NDViewerAPI

multiply zoom by given factor, centered at location.

zoom(double, Point) - Method in class org.micromanager.ndviewer.main.NDViewer

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